This is an old version, view current version.

12.2 Binomial Distribution, Logit Parameterization

Stan also provides a version of the binomial probability mass function distribution with the chance of success parameterized on the unconstrained logistic scale.

12.2.1 Probability Mass Function

Suppose $$N \in \mathbb{N}$$, $$\alpha \in \mathbb{R}$$, and $$n \in \{0,\ldots,N\}$$. Then $\begin{eqnarray*} \text{BinomialLogit}(n~|~N,\alpha) & = & \text{Binomial}(n~|~N,\text{logit}^{-1}(\alpha)) \\[6pt] & = & \binom{N}{n} \left( \text{logit}^{-1}(\alpha) \right)^{n} \left( 1 - \text{logit}^{-1}(\alpha) \right)^{N - n}. \end{eqnarray*}$

12.2.2 Log Probability Mass Function

$\begin{eqnarray*} \log \text{BinomialLogit}(n~|~N,\alpha) & = & \log \Gamma(N+1) - \log \Gamma(n + 1) - \log \Gamma(N- n + 1) \\[4pt] & & { } + n \log \text{logit}^{-1}(\alpha) + (N - n) \log \left( 1 - \text{logit}^{-1}(\alpha) \right), \end{eqnarray*}$

12.2.3 Gradient of Log Probability Mass Function

$\frac{\partial}{\partial \alpha} \log \text{BinomialLogit}(n~|~N,\alpha) = \frac{n}{\text{logit}^{-1}(-\alpha)} - \frac{N - n}{\text{logit}^{-1}(\alpha)}$

12.2.4 Sampling Statement

n ~ binomial_logit(N, alpha)

Increment target log probability density with binomial_logit_lpmf( n | N, alpha) dropping constant additive terms.

12.2.5 Stan Functions

real binomial_logit_lpmf(ints n | ints N, reals alpha)
The log binomial probability mass of n successes in N trials given logit-scaled chance of success alpha