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22.3 Example: Mapping Logistic Regression

An example should help to clarify both the syntax and semantics of the mapping operation and how it may be combined with reductions built into Stan to provide a map-reduce implementation.

Unmapped Logistic Regression

Consider the following simple logistic regression model, which is coded unconventionally to accomodate direct translation to a mapped implementation.

data {
  int y[12];
  real x[12];
}
parameters {
  vector[2] beta;
}
model {
  beta ~ std_normal();
  y ~ bernoulli_logit(beta[1] + beta[2] * to_vector(x));
}

The program is unusual in that it (a) hardcodes the data size, which is not required by the map function but is just used here for simplicity, (b) represents the predictors as a real array even though it needs to be used as a vector, and (c) represents the regression coefficients (intercept and slope) as a vector even though they’re used individually. The bernoulli_logit distribution is used because the argument is on the logit scale—it implicitly applies the inverse logit function to map the argument to a probability.

Mapped Logistic Regression

The unmapped logistic regression model described in the previous subsection may be implemented using Stan’s rectangular mapping functionality as follows.

functions {
  vector lr(vector beta, vector theta, real[] x, int[] y) {
    real lp = bernoulli_logit_lpmf(y | beta[1] + to_vector(x) * beta[2]);
    return [lp]';
  }
}
data {
  int y[12];
  real x[12];
}
transformed data {
  // K = 3 shards
  int ys[3, 4] = { y[1:4], y[5:8], y[9:12] };
  real xs[3, 4] = { x[1:4], x[5:8], x[9:12] };
  vector[0] theta[3];
}
parameters {
  vector[2] beta;
}
model {
  beta ~ std_normal();
  target += sum(map_rect(lr, beta, theta, xs, ys));
}

The first piece of the code is the actual function to compute the logistic regression. The argument beta will contain the regression coefficients (intercept and slope), as before. The second argument theta of job-specific parameters is not used, but nevertheless must be present. The modeled data y is passed as an array of integers and the predictors x as an array of real values. The function body then computes the log probability mass of y and assigns it to the local variable lp. This variable is then used in [lp]' to construct a row vector and then transpose it to a vector to return.

The data are taken in as before. There is an additional transformed data block that breaks the data up into three shards.⁴²

The value 3 is also hard coded; a more practical program would allow the number of shards to be controlled. There are three parallel arrays defined here, each of size three, corresponding to the number of shards. The array ys contains the modeled data variables; each element of the array ys is an array of size four. The second array xs is for the predictors, and each element of it is also of size four. These contained arrays are the same size because the predictors x stand in a one-to-one relationship with the modeled data y. The final array theta is also of size three; its elements are empty vectors, because there are no shard-specific parameters.

The parameters and the prior are as before. The likelihood is now coded using map-reduce. The function lr to compute the log probability mass is mapped over the data xs and ys, which contain the original predictors and outcomes broken into shards. The parameters beta are in the first argument because they are shared across shards. There are no shard-specific parameters, so the array of job-specific parameters theta contains only empty vectors.

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42. The term “shard” is borrowed from databases, where it refers to a slice of the rows of a database. That is exactly what it is here if we think of rows of a dataframe. Stan’s shards are more general in that they need not correspond to rows of a dataframe.↩