A CmdStanDiagnose object is the object returned by the
$diagnose() method of a CmdStanModel object.
CmdStanDiagnose objects have the following associated
methods:
| Method | Description |
$gradients() | Return gradients from diagnostic mode. |
$lp() | Return the total log probability density (target). |
$init() | Return user-specified initial values. |
$metadata() | Return a list of metadata gathered from the CmdStan CSV files. |
$save_output_files() | Save output CSV files to a specified location. |
$save_data_file() | Save JSON data file to a specified location. |
The CmdStanR website (mc-stan.org/cmdstanr) for online documentation and tutorials.
The Stan and CmdStan documentation:
Stan documentation: mc-stan.org/users/documentation
CmdStan User’s Guide: mc-stan.org/docs/cmdstan-guide
Other fitted model objects:
CmdStanGQ,
CmdStanLaplace,
CmdStanMCMC,
CmdStanMLE,
CmdStanPathfinder,
CmdStanVB
# \dontrun{
test <- cmdstanr_example("logistic", method = "diagnose")
# retrieve the gradients
test$gradients()
#> param_idx value model finite_diff error
#> 1 0 -0.656568 21.488200 21.488200 -3.43539e-08
#> 2 1 0.536526 -22.101600 -22.101600 -6.85812e-10
#> 3 2 1.603540 -33.634400 -33.634400 1.93245e-08
#> 4 3 0.609685 0.311848 0.311848 -1.15926e-08
# }