wiener_full_lpdf.hpp

Go to the documentation of this file.

#ifndef STAN_MATH_PRIM_PROB_WIENER_FULL_LPDF_HPP
#define STAN_MATH_PRIM_PROB_WIENER_FULL_LPDF_HPP
 
#include <stan/math/prim/fun.hpp>
#include <stan/math/prim/functor/hcubature.hpp>
#include <stan/math/prim/prob/wiener5_lpdf.hpp>
 
namespace stan {
namespace math {
namespace internal {
 
template <typename T_y, typename T_a, typename T_v, typename T_w, typename T_sv,
          typename T_sw, typename T_err>
inline auto wiener7_grad_sw(const T_y& y, const T_a& a, const T_v& v,
                            const T_w& w, const T_sv& sv, const T_sw& sw,
                            T_err log_error) {
  auto low = w - sw / 2.0;
  const auto lower_value
      = wiener5_density<GradientCalc::ON>(y, a, v, low, sv, log_error);
  auto high = w + sw / 2.0;
  const auto upper_value
      = wiener5_density<GradientCalc::ON>(y, a, v, high, sv, log_error);
  return 0.5 * (lower_value + upper_value) / sw;
}
 
template <GradientCalc GradSW, typename F, typename T_y, typename T_a,
          typename T_v, typename T_w, typename T_sv, typename T_sw,
          typename T_err, std::enable_if_t<!GradSW>* = nullptr>
inline auto conditionally_grad_sw(F&& functor, T_y&& y_diff, T_a&& a, T_v&& v,
                                  T_w&& w, T_sv&& sv, T_sw&& sw,
                                  T_err&& log_error) {
  return functor(y_diff, a, v, w, sv, log_error);
}
 
template <GradientCalc GradSW, typename F, typename T_y, typename T_a,
          typename T_v, typename T_w, typename T_sv, typename T_sw,
          typename T_err, std::enable_if_t<GradSW>* = nullptr>
inline auto conditionally_grad_sw(F&& functor, T_y&& y_diff, T_a&& a, T_v&& v,
                                  T_w&& w, T_sv&& sv, T_sw&& sw,
                                  T_err&& log_error) {
  return functor(y_diff, a, v, w, sv, sw, log_error);
}
 
template <GradientCalc GradSW, GradientCalc GradW7 = GradientCalc::OFF,
          typename Wiener7FunctorT, typename T_err, typename... TArgs>
inline auto wiener7_integrate(const Wiener7FunctorT& wiener7_functor,
                              T_err&& hcubature_err, TArgs&&... args) {
  const auto functor = [&wiener7_functor](auto&&... integration_args) {
    return hcubature(
        [&wiener7_functor](auto&& x, auto&& y, auto&& a, auto&& v, auto&& w,
                           auto&& t0, auto&& sv, auto&& sw, auto&& st0,
                           auto&& log_error) {
          using ret_t = return_type_t<decltype(x), decltype(a), decltype(v),
                                      decltype(w), decltype(t0), decltype(sv),
                                      decltype(sw), decltype(st0),
                                      decltype(st0), decltype(log_error)>;
          scalar_seq_view<decltype(x)> x_vec(x);
          const auto sw_val = GradSW ? 0 : sw;
          const auto new_t0 = t0 + st0 * x_vec[(sw_val != 0) ? 1 : 0];
          if (y - new_t0 <= 0) {
            return ret_t(0.0);
          } else {
            const auto new_w = w + sw_val * (x_vec[0] - 0.5);
            return ret_t(conditionally_grad_sw<GradSW>(
                wiener7_functor, y - new_t0, a, v, new_w, sv, sw, log_error));
          }
        },
        integration_args...);
  };
  return estimate_with_err_check<0, 8, GradW7, GradientCalc::ON>(
      functor, hcubature_err, args...);
}
}  // namespace internal
 
template <bool propto = false, typename T_y, typename T_a, typename T_t0,
          typename T_w, typename T_v, typename T_sv, typename T_sw,
          typename T_st0>
inline auto wiener_lpdf(const T_y& y, const T_a& a, const T_t0& t0,
                        const T_w& w, const T_v& v, const T_sv& sv,
                        const T_sw& sw, const T_st0& st0,
                        const double& precision_derivatives = 1e-4) {
  using ret_t = return_type_t<T_y, T_a, T_t0, T_w, T_v, T_sv, T_sw, T_st0>;
  if (!include_summand<propto, T_y, T_a, T_v, T_w, T_t0, T_sv, T_sw,
                       T_st0>::value) {
    return ret_t(0);
  }
 
  using T_y_ref = ref_type_t<T_y>;
  using T_a_ref = ref_type_t<T_a>;
  using T_v_ref = ref_type_t<T_v>;
  using T_w_ref = ref_type_t<T_w>;
  using T_t0_ref = ref_type_t<T_t0>;
  using T_sv_ref = ref_type_t<T_sv>;
  using T_sw_ref = ref_type_t<T_sw>;
  using T_st0_ref = ref_type_t<T_st0>;
 
  using T_partials_return
      = partials_return_t<T_y, T_a, T_t0, T_w, T_v, T_sv, T_sw, T_st0>;
 
  static constexpr const char* function_name = "wiener_lpdf";
  check_consistent_sizes(function_name, "Random variable", y,
                         "Boundary separation", a, "Drift rate", v,
                         "A-priori bias", w, "Nondecision time", t0,
                         "Inter-trial variability in drift rate", sv,
                         "Inter-trial variability in A-priori bias", sw,
                         "Inter-trial variability in Nondecision time", st0);
 
  T_y_ref y_ref = y;
  T_a_ref a_ref = a;
  T_v_ref v_ref = v;
  T_w_ref w_ref = w;
  T_t0_ref t0_ref = t0;
  T_sv_ref sv_ref = sv;
  T_sw_ref sw_ref = sw;
  T_st0_ref st0_ref = st0;
 
  decltype(auto) y_val = to_ref(as_value_column_array_or_scalar(y_ref));
  decltype(auto) a_val = to_ref(as_value_column_array_or_scalar(a_ref));
  decltype(auto) v_val = to_ref(as_value_column_array_or_scalar(v_ref));
  decltype(auto) w_val = to_ref(as_value_column_array_or_scalar(w_ref));
  decltype(auto) t0_val = to_ref(as_value_column_array_or_scalar(t0_ref));
  decltype(auto) sv_val = to_ref(as_value_column_array_or_scalar(sv_ref));
  decltype(auto) sw_val = to_ref(as_value_column_array_or_scalar(sw_ref));
  decltype(auto) st0_val = to_ref(as_value_column_array_or_scalar(st0_ref));
  check_positive_finite(function_name, "Random variable", y_val);
  check_positive_finite(function_name, "Boundary separation", a_val);
  check_finite(function_name, "Drift rate", v_val);
  check_less(function_name, "A-priori bias", w_val, 1);
  check_greater(function_name, "A-priori bias", w_val, 0);
  check_nonnegative(function_name, "Nondecision time", t0_val);
  check_finite(function_name, "Nondecision time", t0_val);
  check_nonnegative(function_name, "Inter-trial variability in drift rate",
                    sv_val);
  check_finite(function_name, "Inter-trial variability in drift rate", sv_val);
  check_bounded(function_name, "Inter-trial variability in A-priori bias",
                sw_val, 0, 1);
  check_nonnegative(function_name,
                    "Inter-trial variability in Nondecision time", st0_val);
  check_finite(function_name, "Inter-trial variability in Nondecision time",
               st0_val);
 
  const size_t N = max_size(y, a, v, w, t0, sv, sw, st0);
  if (N == 0) {
    return ret_t(0);
  }
  scalar_seq_view<T_y_ref> y_vec(y_ref);
  scalar_seq_view<T_a_ref> a_vec(a_ref);
  scalar_seq_view<T_v_ref> v_vec(v_ref);
  scalar_seq_view<T_w_ref> w_vec(w_ref);
  scalar_seq_view<T_t0_ref> t0_vec(t0_ref);
  scalar_seq_view<T_sv_ref> sv_vec(sv_ref);
  scalar_seq_view<T_sw_ref> sw_vec(sw_ref);
  scalar_seq_view<T_st0_ref> st0_vec(st0_ref);
  const size_t N_y_t0 = max_size(y, t0, st0);
 
  for (size_t i = 0; i < N_y_t0; ++i) {
    if (y_vec[i] <= t0_vec[i]) {
      [&]() STAN_COLD_PATH {
        std::stringstream msg;
        msg << ", but must be greater than nondecision time = " << t0_vec[i];
        std::string msg_str(msg.str());
        throw_domain_error(function_name, "Random variable", y_vec[i], " = ",
                           msg_str.c_str());
      }();
    }
  }
  size_t N_beta_sw = max_size(w, sw);
  for (size_t i = 0; i < N_beta_sw; ++i) {
    if (unlikely(w_vec[i] - .5 * sw_vec[i] <= 0)) {
      [&]() STAN_COLD_PATH {
        std::stringstream msg;
        msg << ", but must be smaller than 2*(A-priori bias) = "
            << 2 * w_vec[i];
        std::string msg_str(msg.str());
        throw_domain_error(function_name,
                           "Inter-trial variability in A-priori bias",
                           sw_vec[i], " = ", msg_str.c_str());
      }();
    }
    if (unlikely(w_vec[i] + .5 * sw_vec[i] >= 1)) {
      [&]() STAN_COLD_PATH {
        std::stringstream msg;
        msg << ", but must be smaller than 2*(1-A-priori bias) = "
            << 2 * (1 - w_vec[i]);
        std::string msg_str(msg.str());
        throw_domain_error(function_name,
                           "Inter-trial variability in A-priori bias",
                           sw_vec[i], " = ", msg_str.c_str());
      }();
    }
  }
  // precision for density
  const T_partials_return log_error_density = log(1e-6);
  // precision for derivatives (controllable by user)
  const auto error_bound = precision_derivatives;
  const auto log_error_derivative = log(error_bound);
  const T_partials_return absolute_error_hcubature = 0.0;
  // eps_rel(Integration)
  const T_partials_return relative_error_hcubature = .9 * error_bound;
  const T_partials_return log_error_absolute = log(1e-12);
  const int maximal_evaluations_hcubature = 6000;
  T_partials_return log_density = 0.0;
  auto ops_partials = make_partials_propagator(y_ref, a_ref, t0_ref, w_ref,
                                               v_ref, sv_ref, sw_ref, st0_ref);
  ret_t result = 0;
 
  // calculate density and partials
  for (size_t i = 0; i < N; i++) {
    if (sw_vec[i] == 0 && st0_vec[i] == 0) {
      // note: because we're delegating to wiener5_lpdf,
      // we need to make sure is_constant is consistent between
      // our inputs and these
      result += wiener_lpdf<propto>(y_vec[i], a_vec[i], t0_vec[i], w_vec[i],
                                    v_vec[i], sv_vec[i], precision_derivatives);
      continue;
    }
    const T_partials_return y_value = y_vec.val(i);
    const T_partials_return a_value = a_vec.val(i);
    const T_partials_return v_value = v_vec.val(i);
    const T_partials_return w_value = w_vec.val(i);
    const T_partials_return t0_value = t0_vec.val(i);
    const T_partials_return sv_value = sv_vec.val(i);
    const T_partials_return sw_value = sw_vec.val(i);
    const T_partials_return st0_value = st0_vec.val(i);
    const int dim = (sw_value != 0) + (st0_value != 0);
    check_positive(function_name,
                   "(Inter-trial variability in A-priori bias) + "
                   "(Inter-trial variability in nondecision time)",
                   dim);
 
    Eigen::Matrix<T_partials_return, -1, 1> xmin = Eigen::VectorXd::Zero(dim);
    Eigen::Matrix<T_partials_return, -1, 1> xmax = Eigen::VectorXd::Ones(dim);
    if (st0_value != 0) {
      xmax[dim - 1] = fmin(1.0, (y_value - t0_value) / st0_value);
    }
 
    T_partials_return hcubature_err
        = log_error_absolute - log_error_density + LOG_TWO + 1;
    using internal::GradientCalc;
    const auto params = std::make_tuple(y_value, a_value, v_value, w_value,
                                        t0_value, sv_value, sw_value, st0_value,
                                        log_error_absolute - LOG_TWO);
    T_partials_return density
        = internal::wiener7_integrate<GradientCalc::OFF, GradientCalc::OFF>(
            [](auto&&... args) {
              return internal::wiener5_density<GradientCalc::ON>(args...);
            },
            hcubature_err, params, dim, xmin, xmax,
            maximal_evaluations_hcubature, absolute_error_hcubature,
            relative_error_hcubature / 2);
    log_density += log(density);
    hcubature_err = log_error_absolute - log_error_derivative
                    + log(fabs(density)) + LOG_TWO + 1;
 
    // computation of derivative for t and precision check in order to give
    // the value as deriv_t to edge1 and as -deriv_t to edge5
    const T_partials_return deriv_t_7
        = internal::wiener7_integrate<GradientCalc::OFF, GradientCalc::OFF>(
              [](auto&&... args) {
                return internal::wiener5_grad_t<GradientCalc::ON>(args...);
              },
              hcubature_err, params, dim, xmin, xmax,
              maximal_evaluations_hcubature, absolute_error_hcubature,
              relative_error_hcubature / 2)
          / density;
 
    // computation of derivatives and precision checks
    T_partials_return derivative;
    if (!is_constant_all<T_y>::value) {
      partials<0>(ops_partials)[i] = deriv_t_7;
    }
    if (!is_constant_all<T_a>::value) {
      partials<1>(ops_partials)[i]
          = internal::wiener7_integrate<GradientCalc::OFF, GradientCalc::OFF>(
                [](auto&&... args) {
                  return internal::wiener5_grad_a<GradientCalc::ON>(args...);
                },
                hcubature_err, params, dim, xmin, xmax,
                maximal_evaluations_hcubature, absolute_error_hcubature,
                relative_error_hcubature / 2)
            / density;
    }
    if (!is_constant_all<T_t0>::value) {
      partials<2>(ops_partials)[i] = -deriv_t_7;
    }
    if (!is_constant_all<T_w>::value) {
      partials<3>(ops_partials)[i]
          = internal::wiener7_integrate<GradientCalc::OFF, GradientCalc::ON>(
                [](auto&&... args) {
                  return internal::wiener5_grad_w<GradientCalc::ON>(args...);
                },
                hcubature_err, params, dim, xmin, xmax,
                maximal_evaluations_hcubature, absolute_error_hcubature,
                relative_error_hcubature / 2)
            / density;
    }
    if (!is_constant_all<T_v>::value) {
      partials<4>(ops_partials)[i]
          = internal::wiener7_integrate<GradientCalc::OFF, GradientCalc::OFF>(
                [](auto&&... args) {
                  return internal::wiener5_grad_v<GradientCalc::ON>(args...);
                },
                hcubature_err, params, dim, xmin, xmax,
                maximal_evaluations_hcubature, absolute_error_hcubature,
                relative_error_hcubature / 2)
            / density;
    }
    if (!is_constant_all<T_sv>::value) {
      partials<5>(ops_partials)[i]
          = internal::wiener7_integrate<GradientCalc::OFF, GradientCalc::OFF>(
                [](auto&&... args) {
                  return internal::wiener5_grad_sv<GradientCalc::ON>(args...);
                },
                hcubature_err, params, dim, xmin, xmax,
                maximal_evaluations_hcubature, absolute_error_hcubature,
                relative_error_hcubature / 2)
            / density;
    }
    if (!is_constant_all<T_sw>::value) {
      if (sw_value == 0) {
        partials<6>(ops_partials)[i] = 0;
      } else {
        if (st0_value == 0) {
          derivative = internal::estimate_with_err_check<
              6, 0, GradientCalc::OFF, GradientCalc::ON>(
              [](auto&&... args) { return internal::wiener7_grad_sw(args...); },
              hcubature_err, y_value - t0_value, a_value, v_value, w_value,
              sv_value, sw_value, log_error_absolute - LOG_TWO);
        } else {
          derivative = internal::wiener7_integrate<GradientCalc::ON,
                                                   GradientCalc::OFF>(
              [](auto&&... args) { return internal::wiener7_grad_sw(args...); },
              hcubature_err, params, 1, xmin, xmax,
              maximal_evaluations_hcubature, absolute_error_hcubature,
              relative_error_hcubature / 2);
        }
        partials<6>(ops_partials)[i] = derivative / density - 1.0 / sw_value;
      }
    }
    if (!is_constant_all<T_st0>::value) {
      T_partials_return f;
      if (st0_value == 0) {
        partials<7>(ops_partials)[i] = 0;
      } else if (y_value - (t0_value + st0_value) <= 0) {
        partials<7>(ops_partials)[i] = -1 / st0_value;
      } else {
        const T_partials_return t0_st0 = t0_value + st0_value;
        if (sw_value == 0) {
          f = internal::estimate_with_err_check<5, 0, GradientCalc::OFF,
                                                GradientCalc::ON>(
              [](auto&&... args) {
                return internal::wiener5_density<GradientCalc::ON>(args...);
              },
              log_error_derivative + log(st0_value), y_value - t0_st0, a_value,
              v_value, w_value, sv_value, log_error_absolute - LOG_TWO);
        } else {
          const T_partials_return new_error = log_error_absolute - LOG_TWO;
          auto params_st
              = std::make_tuple(y_value, a_value, v_value, w_value, t0_st0,
                                sv_value, sw_value, 0.0, new_error);
          f = internal::wiener7_integrate<GradientCalc::OFF, GradientCalc::OFF>(
              [](auto&&... args) {
                return internal::wiener5_density<GradientCalc::ON>(args...);
              },
              hcubature_err, params_st, 1, xmin, xmax,
              maximal_evaluations_hcubature, absolute_error_hcubature,
              relative_error_hcubature / 2.0);
        }
        partials<7>(ops_partials)[i] = -1 / st0_value + f / st0_value / density;
      }
    }
  }
  return result + ops_partials.build(log_density);
}
}  // namespace math
}  // namespace stan
#endif