Automatic Differentiation
 
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gamma_lpdf.hpp
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1#ifndef STAN_MATH_OPENCL_PRIM_GAMMA_LPDF_HPP
2#define STAN_MATH_OPENCL_PRIM_GAMMA_LPDF_HPP
3#ifdef STAN_OPENCL
4
14
15namespace stan {
16namespace math {
17
41template <bool propto, typename T_y_cl, typename T_shape_cl,
42 typename T_inv_scale_cl,
44 T_y_cl, T_shape_cl, T_inv_scale_cl>* = nullptr,
45 require_any_not_stan_scalar_t<T_y_cl, T_shape_cl,
46 T_inv_scale_cl>* = nullptr>
48 const T_y_cl& y, const T_shape_cl& alpha, const T_inv_scale_cl& beta) {
49 using std::isfinite;
50 using std::isnan;
51 static constexpr const char* function = "gamma_lpdf(OpenCL)";
52 using T_partials_return
54
55 check_consistent_sizes(function, "Random variable", y, "Shape parameter",
56 alpha, "Inverse scale parameter", beta);
57 const size_t N = max_size(y, alpha, beta);
58 if (N == 0) {
59 return 0.0;
60 }
62 return 0.0;
63 }
64
65 const auto& y_col = as_column_vector_or_scalar(y);
66 const auto& alpha_col = as_column_vector_or_scalar(alpha);
67 const auto& beta_col = as_column_vector_or_scalar(beta);
68
69 const auto& y_val = value_of(y_col);
70 const auto& alpha_val = value_of(alpha_col);
71 const auto& beta_val = value_of(beta_col);
72
73 auto check_y_not_nan
74 = check_cl(function, "Random variable", y_val, "not NaN");
75 auto y_not_nan_expr = y_val > 0 && isfinite(y_val);
76 auto check_alpha_pos_finite
77 = check_cl(function, "Shape parameter", alpha_val, "positive finite");
78 auto alpha_pos_finite_expr = alpha_val > 0 && isfinite(alpha_val);
79 auto check_beta_pos_finite = check_cl(function, "Inverse scale parameter",
80 beta_val, "positive finite");
81 auto beta_pos_finite_expr = beta_val > 0 && isfinite(beta_val);
82
83 auto any_y_negative_expr = colwise_max(cast<char>(y_val < 0));
84 auto log_y_expr = log(y_val);
85 auto log_beta_expr = log(beta_val);
86 auto logp1_expr = static_select<include_summand<propto, T_shape_cl>::value>(
87 -lgamma(alpha_val), constant(0.0, N, 1));
88 auto logp2_expr = static_select<
90 logp1_expr + elt_multiply(alpha_val, log_beta_expr), logp1_expr);
91 auto logp3_expr
92 = static_select<include_summand<propto, T_y_cl, T_shape_cl>::value>(
93 logp2_expr + elt_multiply(alpha_val - 1.0, log_y_expr), logp2_expr);
94 auto logp_expr = colwise_sum(
96 logp3_expr - elt_multiply(beta_val, y_val), logp3_expr));
97
98 auto y_deriv_expr = elt_divide(alpha_val - 1, y_val) - beta_val;
99 auto alpha_deriv_expr = log_beta_expr + log_y_expr - digamma(alpha_val);
100 auto beta_deriv_expr = elt_divide(alpha_val, beta_val) - y_val;
101
102 matrix_cl<char> any_y_negative_cl;
103 matrix_cl<double> logp_cl;
104 matrix_cl<double> y_deriv_cl;
105 matrix_cl<double> alpha_deriv_cl;
106 matrix_cl<double> beta_deriv_cl;
107
108 results(check_y_not_nan, check_alpha_pos_finite, check_beta_pos_finite,
109 any_y_negative_cl, logp_cl, y_deriv_cl, alpha_deriv_cl, beta_deriv_cl)
110 = expressions(
111 y_not_nan_expr, alpha_pos_finite_expr, beta_pos_finite_expr,
112 any_y_negative_expr, logp_expr,
113 calc_if<!is_constant<T_y_cl>::value>(y_deriv_expr),
114 calc_if<!is_constant<T_shape_cl>::value>(alpha_deriv_expr),
116
117 if (from_matrix_cl(any_y_negative_cl).any()) {
118 return LOG_ZERO;
119 }
120
121 T_partials_return logp = sum(from_matrix_cl(logp_cl));
122
123 auto ops_partials = make_partials_propagator(y_col, alpha_col, beta_col);
125 partials<0>(ops_partials) = std::move(y_deriv_cl);
126 }
128 partials<1>(ops_partials) = std::move(alpha_deriv_cl);
129 }
131 partials<2>(ops_partials) = std::move(beta_deriv_cl);
132 }
133
134 return ops_partials.build(logp);
135}
136
137} // namespace math
138} // namespace stan
139#endif
140#endif
Represents an arithmetic matrix on the OpenCL device.
Definition matrix_cl.hpp:47
elt_multiply_< as_operation_cl_t< T_a >, as_operation_cl_t< T_b > > elt_multiply(T_a &&a, T_b &&b)
isfinite_< as_operation_cl_t< T > > isfinite(T &&a)
auto check_cl(const char *function, const char *var_name, T &&y, const char *must_be)
Constructs a check on opencl matrix or expression.
Definition check_cl.hpp:219
results_cl< T_results... > results(T_results &&... results)
Deduces types for constructing results_cl object.
auto as_column_vector_or_scalar(T &&a)
as_column_vector_or_scalar of a kernel generator expression.
elt_divide_< as_operation_cl_t< T_a >, as_operation_cl_t< T_b > > elt_divide(T_a &&a, T_b &&b)
auto constant(const T a, int rows, int cols)
Matrix of repeated values in kernel generator expressions.
Definition constant.hpp:130
auto colwise_max(T &&a)
Column wise max - reduction of a kernel generator expression.
calc_if_< true, as_operation_cl_t< T > > calc_if(T &&a)
Definition calc_if.hpp:121
auto colwise_sum(T &&a)
Column wise sum - reduction of a kernel generator expression.
expressions_cl< T_expressions... > expressions(T_expressions &&... expressions)
Deduces types for constructing expressions_cl object.
return_type_t< T_y_cl, T_shape_cl, T_inv_scale_cl > gamma_lpdf(const T_y_cl &y, const T_shape_cl &alpha, const T_inv_scale_cl &beta)
The log of a gamma density for y with the specified shape and inverse scale parameters.
auto from_matrix_cl(const T &src)
Copies the source matrix that is stored on the OpenCL device to the destination Eigen matrix.
Definition copy.hpp:61
require_all_t< is_prim_or_rev_kernel_expression< std::decay_t< Types > >... > require_all_prim_or_rev_kernel_expression_t
Require type satisfies is_prim_or_rev_kernel_expression.
require_any_not_t< is_stan_scalar< std::decay_t< Types > >... > require_any_not_stan_scalar_t
Require at least one of the types do not satisfy is_stan_scalar.
typename return_type< Ts... >::type return_type_t
Convenience type for the return type of the specified template parameters.
static constexpr double LOG_ZERO
The natural logarithm of 0, .
Definition constants.hpp:68
constexpr bool any(T x)
Return true if any values in the input are true.
Definition any.hpp:21
T value_of(const fvar< T > &v)
Return the value of the specified variable.
Definition value_of.hpp:18
fvar< T > log(const fvar< T > &x)
Definition log.hpp:18
T1 static_select(T1 &&a, T2 &&b)
Returns one of the arguments that can be of different type, depending on the compile time condition.
void check_consistent_sizes(const char *)
Trivial no input case, this function is a no-op.
fvar< T > lgamma(const fvar< T > &x)
Return the natural logarithm of the gamma function applied to the specified argument.
Definition lgamma.hpp:21
auto sum(const std::vector< T > &m)
Return the sum of the entries of the specified standard vector.
Definition sum.hpp:23
int64_t max_size(const T1 &x1, const Ts &... xs)
Calculate the size of the largest input.
Definition max_size.hpp:20
fvar< T > beta(const fvar< T > &x1, const fvar< T > &x2)
Return fvar with the beta function applied to the specified arguments and its gradient.
Definition beta.hpp:51
auto make_partials_propagator(Ops &&... ops)
Construct an partials_propagator.
fvar< T > digamma(const fvar< T > &x)
Return the derivative of the log gamma function at the specified argument.
Definition digamma.hpp:23
typename partials_return_type< Args... >::type partials_return_t
The lgamma implementation in stan-math is based on either the reentrant safe lgamma_r implementation ...
bool isnan(const stan::math::var &a)
Checks if the given number is NaN.
Definition std_isnan.hpp:18
Metaprogramming struct to detect whether a given type is constant in the mathematical sense (not the ...
Template metaprogram to calculate whether a summand needs to be included in a proportional (log) prob...