cholesky_factor_free.hpp

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#ifndef STAN_MATH_PRIM_CONSTRAINT_CHOLESKY_FACTOR_FREE_HPP
#define STAN_MATH_PRIM_CONSTRAINT_CHOLESKY_FACTOR_FREE_HPP
 
#include <stan/math/prim/err.hpp>
#include <stan/math/prim/fun/Eigen.hpp>
#include <stan/math/prim/fun/log.hpp>
#include <stan/math/prim/fun/to_ref.hpp>
#include <cmath>
#include <stdexcept>
 
namespace stan {
namespace math {
 
template <typename T, require_eigen_t<T>* = nullptr>
Eigen::Matrix<value_type_t<T>, Eigen::Dynamic, 1> cholesky_factor_free(
    const T& y) {
  using std::log;
 
  const auto& y_ref = to_ref(y);
  check_cholesky_factor("cholesky_factor_free", "y", y_ref);
  int M = y.rows();
  int N = y.cols();
  Eigen::Matrix<value_type_t<T>, Eigen::Dynamic, 1> x((N * (N + 1)) / 2
                                                      + (M - N) * N);
  int pos = 0;
 
  for (int m = 0; m < N; ++m) {
    x.segment(pos, m) = y_ref.row(m).head(m);
    pos += m;
    x.coeffRef(pos++) = log(y_ref.coeff(m, m));
  }
 
  for (int m = N; m < M; ++m) {
    x.segment(pos, N) = y_ref.row(m);
    pos += N;
  }
  return x;
}
 
template <typename T, require_std_vector_t<T>* = nullptr>
auto cholesky_factor_free(const T& x) {
  return apply_vector_unary<T>::apply(
      x, [](auto&& v) { return cholesky_factor_free(v); });
}
 
}  // namespace math
}  // namespace stan
 
#endif